Things quiet down until Spectra resurfaces again to battle Dan and when he loses, he concedes that Dan is number one and joins the Brawlers, returning to his original self, Keith Clay. Drago, however, refuses to give up, manages to destroy the BT System by absorbing all 6 Attribute Energies and evolves again into Helix Dragonoid. However, the remaining energies are taken and the Brawlers rush to New Vestroia to evacuate all the Bakugan. After losing half the energies, the Brawlers decided to attack instead, engaging a temporary alliance with Spectra Phantom, the former leader of the Vexos, along with his sidekick Gus Grav. These energies result in the 6 Bakugan evolving. In desperation, the Ancient Warriors give the Resistance Bakugan their attribute energies to protect them from Zenoheld, who has the Bakugan Termination System, a machine built to wipe out all Bakugan but needs the Attribute Energies to power it. The Six Ancient Warriors engage in a 6-on-1 battle with Zenoheld, but are unable to defeat Zenoheld's Mechanical Bakugan, Farbros. The Resistance part but reunite six months later when they discover that King Zenoheld of Vestal has attacked the Six Ancient Warriors in an attempt to steal the Attribute Energies.

The Brawlers destroy each of the three Dimension Controllers that keep the Bakugan in their ball form, liberating New Vestroia. While battling against the evil Vexos, the top Vestal brawlers, who follow the rules of their Prince. Three Vestals: Mira, Ace and Baron, however, encounter Shun, who was an old friend of Dan and Marucho, so he knew the truth about Bakugan and formed the Bakugan Brawlers Resistance. The two of the six Battle Brawlers (Dan and Marucho) return to New Vestroia and discover that it has been colonized by an alien race called Vestals, who are unaware that the Bakugan are intelligent beings.

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